PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1190s0030.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 483aa    MW: 53713.5 Da    PI: 5.6738
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1190s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.18.1e-35181082101
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+ye+++d++++e++sws+n+nsfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k
  SapurV1A.1190s0030.1.p  18 FLMKTYEMVDDSSTDEIVSWSSNKNSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPEK---------WEFANEDFLK 95 
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkk 101
                             ++k+ll++i+r+k
  SapurV1A.1190s0030.1.p  96 DQKHLLKNIHRRK 108
                             ***********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.8E-5914107IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.98E-3614107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-3714107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000569.8E-191841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-3018107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-195668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-196981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEAGSSPSSG AGGGPAPFLM KTYEMVDDSS TDEIVSWSSN KNSFVVWNPP EFARLLLPTF  60
FKHNNFSSFI RQLNTYGFRK IDPEKWEFAN EDFLKDQKHL LKNIHRRKPI HSHSNPPGSL  120
VDPDRAAYEE EIDKLSRDKA KLKASIVGLS QQRSSAKIQV EDLTQRIDTM QQRQEKLLSF  180
FEKAVQNPAF VEHLACKIES MDFSAYGKKR RLPQADHSMP TAENSFVENH CSSRPESNVI  240
HQDFSNTLRL ELSQAVSDIN LISRSTLSSN EEGGSPQRKI SELNPKDGPT RTSGLHLAPE  300
TLELSDTGTS YTFKVNPAVP RDLPASGSQA LHSLQANLVS NEEGDGNISC QLNLTLASSA  360
VQVNKNPYLA RILGQEIAKP PESRNESNKD SDMRVIQNLN LGNESTTLSC SQEIPNNNQA  420
PASAPARAND VFWEQFLTER PGSSENEEAS SNYRANSYDE QDERRLGFGV PRNAKNMEQL  480
SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-21710715129Heat shock factor protein 1
5d5v_B2e-21710715129Heat shock factor protein 1
5d5v_D2e-21710715129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139830.0KP013983.1 Populus simonii heat shock transcription factor A5a (HsfA5a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373092.10.0Heat Stress Transcription Factor family protein
SwissprotQ94BZ51e-170HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A0N7DK210.0A0A0N7DK21_9R
STRINGPOPTR_0017s08630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-165HSF family protein